Category

Bio-informatic

Bio-informatic

Link dump – Fancy distinct colors

Writing the blog and the thesis at the same time appeared to be harder than expected. I will be back here soon enough ! In the mean time, I was looking to beautify R generated graphs and most of the time I got stuck in having to choose nice but…
Adrien
March 9, 2016
Bio-informatic

Metagenome part 3: Binning the reads – the easy part

In the previous article we assembled a first version of the metagenome, using a fast assembler creating a lot of rather small contigs. We need now to separate these reads according to the different genomes present in the assembly: this is called binning. To tease apart the different genomes we…
Adrien
January 7, 2016
Bio-informatic

Metagenome part 2: Assembling the reads

We continue the analysis of a metagenome library coming from a sample of the dorsal tongue of SRS147120. After the previous article we now we know what to expect in the metagenomic library. We have quite a diversity of predicted OTU. It is time to do the first round of…
Adrien
January 3, 2016