{"id":290,"date":"2016-07-05T14:19:06","date_gmt":"2016-07-05T14:19:06","guid":{"rendered":"http:\/\/www.aassie.net\/Pro\/?p=290"},"modified":"2017-11-14T12:46:26","modified_gmt":"2017-11-14T12:46:26","slug":"a-network-of-pylori","status":"publish","type":"post","link":"https:\/\/www.aassie.net\/Pro\/a-network-of-pylori\/","title":{"rendered":"[Playing with Data] A network of Pylori"},"content":{"rendered":"<p><a href=\"https:\/\/www.aassie.net\/Pro\/wp-content\/uploads\/2016\/05\/second.large_.png\"><img loading=\"lazy\" decoding=\"async\" class=\"aligncenter wp-image-291 size-full\" src=\"https:\/\/www.aassie.net\/Pro\/wp-content\/uploads\/2016\/05\/second.large_.png\" alt=\"\" width=\"1024\" height=\"1024\" srcset=\"https:\/\/www.aassie.net\/Pro\/wp-content\/uploads\/2016\/05\/second.large_.png 1024w, https:\/\/www.aassie.net\/Pro\/wp-content\/uploads\/2016\/05\/second.large_-150x150.png 150w, https:\/\/www.aassie.net\/Pro\/wp-content\/uploads\/2016\/05\/second.large_-300x300.png 300w, https:\/\/www.aassie.net\/Pro\/wp-content\/uploads\/2016\/05\/second.large_-768x768.png 768w, https:\/\/www.aassie.net\/Pro\/wp-content\/uploads\/2016\/05\/second.large_-50x50.png 50w, https:\/\/www.aassie.net\/Pro\/wp-content\/uploads\/2016\/05\/second.large_-100x100.png 100w, https:\/\/www.aassie.net\/Pro\/wp-content\/uploads\/2016\/05\/second.large_-500x500.png 500w, https:\/\/www.aassie.net\/Pro\/wp-content\/uploads\/2016\/05\/second.large_-1000x1000.png 1000w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><\/a><\/p>\n<p>So I am playing with the idea of genome comparison and network analysis. And as a small teaser I want to share the above picture. On this figure each dot represent a gene from one of the 83 more or less complete <em>Helicobacter pylori<\/em> genomes used in the comparison, linked to each other according to blastp identity values.<\/p>\n<p>More about this coming soon, but I wanted to share the pretty picture.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>So I am playing with the idea of genome comparison and network analysis. And as a small teaser I want to share the above picture. On this figure each dot represent a gene from one of the 83 more or less complete Helicobacter pylori genomes used in the comparison, linked&#8230;<\/p>\n","protected":false},"author":2,"featured_media":291,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[4,56],"tags":[11,25,26,38,15],"_links":{"self":[{"href":"https:\/\/www.aassie.net\/Pro\/wp-json\/wp\/v2\/posts\/290"}],"collection":[{"href":"https:\/\/www.aassie.net\/Pro\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.aassie.net\/Pro\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.aassie.net\/Pro\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.aassie.net\/Pro\/wp-json\/wp\/v2\/comments?post=290"}],"version-history":[{"count":6,"href":"https:\/\/www.aassie.net\/Pro\/wp-json\/wp\/v2\/posts\/290\/revisions"}],"predecessor-version":[{"id":648,"href":"https:\/\/www.aassie.net\/Pro\/wp-json\/wp\/v2\/posts\/290\/revisions\/648"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.aassie.net\/Pro\/wp-json\/wp\/v2\/media\/291"}],"wp:attachment":[{"href":"https:\/\/www.aassie.net\/Pro\/wp-json\/wp\/v2\/media?parent=290"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.aassie.net\/Pro\/wp-json\/wp\/v2\/categories?post=290"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.aassie.net\/Pro\/wp-json\/wp\/v2\/tags?post=290"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}