Skip to main content
Category

Bio-informatic

Bio-informaticFun

Facepalm Thursdays…

I was trying to build a Cazy reference database to explore the carbohydrate profiles of the genomes in our microbial laboratory collection. I have a parallel script downloading the proteins sequences from NCBI then aligning and creating a hmm profile for later use. This morning I am looking through the…
Adrien
February 17, 2022
Bio-informatic

Link dump – Fancy distinct colors

Writing the blog and the thesis at the same time appeared to be harder than expected. I will be back here soon enough ! In the mean time, I was looking to beautify R generated graphs and most of the time I got stuck in having to choose nice but…
Adrien
March 9, 2016
Bio-informatic

Metagenome part 3: Binning the reads – the easy part

In the previous article we assembled a first version of the metagenome, using a fast assembler creating a lot of rather small contigs. We need now to separate these reads according to the different genomes present in the assembly: this is called binning. To tease apart the different genomes we…
Adrien
January 7, 2016